Note: These plugins can be downloaded using the Plugin Manager in Savant. To access the Plugin Manager, click Plugins > Plugin Manager.
| Name | Description |
|---|
| 1000 Genomes | Load 1000 Genomes alignment tracks |
| Aberrant Splice Modelling | Performs modelling and visualization of splice junctions |
| Chromatogram | Shows sequencing chromatograms atop reference genome |
| edgeR | Detects and visualizes differential enrichment from RNA-seq or ChIP-seq data |
| Data Table | Shows textual data from track records in tabular form |
| Export | Exports screenshots of all bookmarked locations |
| GATK | Predicts and visualizes genotypes from read alignment tracks |
| Gene Ontology | Guides navigation based on ontology terms |
| iReckon | Reconstructs and estimates isoforms from RNA-seq data |
| PING | Guides navigation based on protein-protein interaction databases |
| Remote Commander | Issue navigation and other commands remotely through external tools |
| Ribosome | Shows the amino acid translation of gene tracks |
| SimpleSNP | Predicts and visualizes SNVs from read alignment tracks |
| Snapshot | Exports track images at every bookmarked genomic region |
| SRMA | Realigns HTS read alignments |
| UCSC Explorer | Provides a graphical interface for loading UCSC tracks |
| WikiPathways | Guides navigation based on biological pathways |
Featured Plugin The Aberrant Splice Modelling plugin was developed by Alexander Churbanov from the Beijing Institute of Genomics. It performs modelling and visualization of splice site junctions with a Bayesian splice site sensor. Download this and other great plugins through the built-in Plugin Manager.
